Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12325863 chr17:50263148 A/C 4.41E-5 174 25.6 28.38 14.43 KM Plot
PCPG rs12327941 chr2:176199918 G/T 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs12328954 chr2:24354147 G/C 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs12329043 chr2:24358160 A/C 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs12329297 chr2:24358001 G/C 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs12346749 chr9:36099880 G/T 0 177 25.47 26.05 2.93 KM Plot
PCPG rs12365075 chr11:2250672 C/A 0.000187 176 25.08 25.77 85.88 KM Plot
PCPG rs12403768 chr1:40505210 G/T 2.63E-6 174 25 24.23 37.18 KM Plot
PCPG rs12408735 chr1:40512261 C/T 3.3E-6 170 25 25.53 37.18 KM Plot
PCPG rs12438427 chr15:56295062 A/T 0.000407 178 21.55 25.7 25.2 KM Plot
PCPG rs12443357 chr15:56305980 C/T 0.000443 177 25 25.7 21.55 KM Plot
PCPG rs12443539 chr16:88642112 G/A 0.000211 172 25.4 24.35 14.47 KM Plot
PCPG rs12447033 chr16:71583655 G/T 0.000113 178 24.85 25.75 15.82 KM Plot
PCPG rs12447979 chr16:1688806 T/A 0 177 25 29.57 2.93 KM Plot
PCPG rs12450602 chr17:50300195 C/G 5.89E-5 178 25.53 28.3 14.47 KM Plot